S. cerevisiae - Kluyveromyces lactis RSTs

mips


Table of syntheny between ORFs of K. lactis and S. cerevisiae

List of K. lactis RSTs sequenced at the two ends having S. cerevisiae homologs. Homologous S. cerevisiae ORFs are identified by the systematic nomenclature and gene name when available; related duplicated chromosomal regions are also indicated.

K.lactis RST

S. cerevisiae

name

end*

Accession n

ORF homolog

gene name

chromosome

duplicated region block number**

okam3a02

r

AJ229607

A_A110w

-

I

2

 

d

AJ229606

YOR361c

PRT1

XV

2

 

 

 

 

 

 

 

okam5b04

d

AJ229859

YAL043c

PTA1

I

2

 

r

AJ229860

YOR359w

-

XV

2

 

 

 

 

 

 

 

okam1c06

r

AJ229568

YBL014c

RRN6

II

 

 

d

AJ229567

YGL026c

TRP5

VII

 

 

 

 

 

 

 

 

okam6b06

d

AJ229987

YBR114w

RAD16

II

7

 

r

AJ229988

YBR115c

LYS2

II

7

 

 

 

 

 

 

 

okam5b03

d

AJ229857

YBR236c

ABD1

II

 

 

r

AJ229858

YBR237w

PRP5

II

 

 

 

 

 

 

 

 

okam3f12

d

AJ229706

YBR238c

-

II

6

 

r

AJ229707

YBR239c

-

II

6

 

 

 

 

 

 

 

okam5f04

r

AJ229920

YBR287w

-

II

 

 

d

AJ229919

YOR367w

-

XV

2

 

 

 

 

 

 

 

okam2a11

d

AJ229601

YCL035c

-

III

9

 

r

AJ229602

YCL036w

-

III

9

 

 

 

 

 

 

 

okam3a04

r

AJ229610

YCR019w

MAK32

III

11

 

d

AJ229609

YEL013w

-

V

 

 

 

 

 

 

 

 

okam5d04

d##

AJ229886

YDL022w

GPD1

IV

21

 

d##

AJ229886

YOL059w

GPD2

XV

21

 

r

AJ229887

YOL058w

ARG1

XV

21

 

 

 

 

 

 

 

okam3c12

r

AJ229657

YDL168w

SFA1

IV

 

 

d

AJ229656

YLR200w

YKE2

XII

 

 

 

 

 

 

 

 

okam3d03

d

AJ229662

YDL195w

SEC31

IV

 

 

r

AJ229663

YLR218c

-

XII

 

 

 

 

 

 

 

 

okam3a06

d

AJ229612

YDR387c

-

IV

23

 

r

AJ229613

YDR388w

RVS167

IV

23

 

 

 

 

 

 

 

okam3d02

r

AJ229661

YDR407c

-

IV

 

 

d

AJ229660

YPL082c

MOT1

XVI

8

 

 

 

 

 

 

 

okam5d11

d

AJ229897

YDR421w

-

IV

 

 

r

AJ229898

YML006c

-

XIII

 

 

 

 

 

 

 

 

okam5g10

d

AJ229944

YDR430c

-

IV

limit of 19#

 

r

AJ229945

YML011c

-

XIII

limit of 19#

 

 

 

 

 

 

 

okam6d04

r

AJ230015

YDR464w

SPP41

IV

 

 

d

AJ230014

YPR159w

KRE6

XVI

34

 

 

 

 

 

 

 

okam3b04

d

AJ229628

YEL031w

-

V

28

 

r

AJ229629

YJR046w

-

X

28

 

 

 

 

 

 

 

okam5h01

r

AJ229951

YER091c

MET6

V

4

 

d

AJ229950

YER093c

-

V

4

 

 

 

 

 

 

 

okam4f04

r

AJ229794

YGL036w

MTC2

VII

 

 

d

AJ229793

YLL019c

KNS1

XII

53

 

 

 

 

 

 

 

okam3f02

r

AJ229690

YGL256w

ADH4

VII

 

 

d

AJ229689

YKL216w

URA1

XII

 

 

 

 

 

 

 

 

okam6c04

r

AJ230001

YGR046w

-

VII

30

 

d

AJ230000

YGR047c

TFC4

VII

30

 

 

 

 

 

 

 

okam4d03

d

AJ229769

YGR075c

PRP38

VII

 

 

r

AJ229770

YLL018c

DPS1

XII

53

 

 

 

 

 

 

 

okam6b08

d

AJ229989

YGR111w

-

VII

34

 

r

AJ229990

YPR122w

AXL1

XVI

34

 

 

 

 

 

 

 

okam3f03

d

AJ229691

YGR117c

-

VII

34

 

r##

AJ229692

YGR118w

RPS23A

VII

34

 

r##

AJ229692

YPR132w

RPS23B

XVI

34

 

 

 

 

 

 

 

okam3d08

r

AJ229671

YGR187c

HGH1

V

 

 

d

AJ229670

YLL013c

 

XII

 

 

 

 

 

 

 

 

okam5b05

d

AJ229861

YGR196c

-

VII

 

 

r

AJ229862

YJR013w

-

X

 

 

 

 

 

 

 

 

okam3h08

d

AJ229730

YHL019c

APM2

VIII

 

 

r

AJ229731

YKL040c

 

XI

 

 

 

 

 

 

 

 

okam3f10

d

AJ229702

YIR003w

-

IX

 

 

r

AJ229703

YIR004w

-

IX

 

 

 

 

 

 

 

 

okam3e12

d

AJ229686

YJL066c

 

X

 

 

r##

AJ229687

YJL172w

CPS1

X

40

 

r##

AJ229687

YOL153c

psCPS1_homol

XV

 

 

 

 

 

 

 

 

okam5d02

d

AJ229884

YJL083w

 

X

41

 

r

AJ229885

YKR018c

 

XI

41

 

 

 

 

 

 

 

okam11e01

d

AJ229518

YLL034c

-

XII

 

 

r

AJ229519

YLL034c

-

XII

 

 

d

AJ229518

YLL035w

-

XII

 

 

 

 

 

 

 

 

okam5a09

d

AJ229845

YLR086w

-

XII

16

 

r

AJ229846

YLR087c

-

XII

16

 

 

 

 

 

 

 

okam4d10

r##

AJ229779

YDR502c

SAM2

IV

18

 

r##

AJ229779

YLR180w

SAM1

XII

18

 

d

AJ229778

YLR181c

-

XII

18

 

 

 

 

 

 

 

okam4b06

d

AJ229751

YLR263w

RED1

XII

45

 

r

AJ229752

YOR168w

GLN4

XV

45

 

 

 

 

 

 

 

okam5a03

r

AJ229836

YLR386w

-

XII

15

 

d

AJ229835

YLR387c

-

XII

15

 

 

 

 

 

 

 

okam6b09

d

AJ229991

YLR455w

-

XII

 

 

r

AJ229992

YPR173c

VPS4

XVI

 

 

 

 

 

 

 

 

okam5d06

r

AJ229889

YMR212c

-

XIII

 

 

d

AJ229888

YOR274w

MOD5

XV

 

 

 

 

 

 

 

 

okam5b06

d

AJ229863

YNL236w

SIN4

XIV

 

 

r

AJ229864

YNL237w

YTP1

XIV

 

 

 

 

 

 

 

 

okam3c08

r

AJ229650

YNL308c

-

XIV

 

 

d

AJ229649

YNL312w

RFA2

XIV

 

 

 

 

 

 

 

 

okam5d04

r

AJ229887

YOL058w

ARG1

XV

21

 

d

AJ229886

YOL059w

GPD2

XV

21

 

 

 

 

 

 

 

okam5g05

d

AJ229936

YOR116c

RPO31

XV

 

 

r

AJ229937

YOR117w

RPT5

XV

 

 

 

 

 

 

 

 

okam5g11

r

AJ229947

YOR229w

-

XV

51

 

d

AJ229946

YPL138c

-

XVI

51

 

 

 

 

 

 

 

okam4f07

r

AJ229800

YOR294w

 

XV

47

 

d

AJ229799

YOR296w

 

XV

47

 

 

 

 

 

 

 

okam3a09

r

AJ229617

YPL042c

SSN3

XVI

 

 

d

AJ229616

YPL043w

NOP4

XVI

 

 

 

 

 

 

 

 

okam3b06

d

AJ229632

YPL111w

CAR1

XVI

 

 

r

AJ229633

YPL112c

 

XVI

 

 

 

* K. lactis RSTs (Random Sequenced Tags) sequenced at the two ends (r and d)

** Block numbers are from Wolfe and Shieds (1997), Nature, 387, 708-713

# These ORFs are included in duplicated regions larger than blocks n 19 (A. Perrin, unpublished data)

## K. lactis sequences having two S. cerevisiae homologs