Yeast - Complete transcriptional map of chromosome XI

mips


ORFs YKL056c - YKL010c

Systematic nomenclature
Gene name
Unique-
ness
ORF size
Notes
RNA size
a YPGlu
a YPGly
a W0
alpha
YPGlu
alpha YPGly
alpha
W0
diploid YPGlu
diploid YPGly
diploid W0
YKL056c
 
(d)
501
 
740
     
e
e
e
     
YKL055c
 
(d)
834
 
-
                 
YKL054c
 
(d)
2214
 
2800
+
+
+
+
+
+
+
+
+
YKL053w
 
(d)
372
16
1200
e
e
e
e
e
e
e
e
e
YKL052c
 
(d)
876
16
1700
   
+
   
+
   
+
YKL051w
   
1059
 
1350
e
e
e
e
e
e
e
e
e
YKL050c
   
2766
 
2900
e
e
e
e
e
e
e
e
e
YKL049c
CSE4
 
411
 
-
                 
YKL048c
ELM1
 
1920
 
1400
+
e
e
+
e
e
e
e
e
YKL047w
 
(d)
1548
 
-
                 
YKL046c
 
(d)
1347
 
-
                 
YKL045w
PRI2
(d)
1584
 
-
                 
YKL044w
   
318
 
-
                 
YKL043w
PHD1
 
1098
 
1700
e
e
e
e
e
e
e
e
e
YKL042w
SPC42
 
1089
 
-
                 
YKL041w
   
672
 
-
                 
YKL040c
   
768
 
-
                 
YKL039w
PTM1
 
1593
 
2400
e
e
e
e
e
e
e
e
e
YKL038w
   
3510
 
-
                 
YKL037w
   
354
 
-
                 
YKL036c
   
390
 
-
                 
YKL035w
UGP1
 
1497
 
1800
e
e
e
e
e
e
e
e
e
YKL034w
   
2274
 
-
                 
YKL033w
   
3114
 
-
                 
tV(GTT)KL1
tRNA Val 1a
     
250
e
e
e
e
e
e
e
e
e
YKL032c
IXR1
 
1791
 
-
                 
YKL031w
   
411
 
-
                 
YKL030w
   
603
 
-
                 
YKL029c
MAE1
 
2007
 
2200
e
e
e
e
e
e
     
YKL028w
TFA1
 
1446
17
1550
e
e
e
e
e
e
     
YKL027w
   
1341
17
-
                 
YKL026c
 
(d)
501
 
-
                 
YKL025c
 
(d)
2037
 
-
                 
YKL024c
URA6
(d)
612
 
1050
   
+
   
+
     
YKL023w
 
(d)
831
18
1700
+
+
+
+
+
+
+
+
+
YKL022c
CDC16
(d)
2520
 
-
                 
YKL021c
MAK11
(d)
1404
 
-
                 
YKL020c
SPT23
(d)
3246
 
4000
e
e
e
e
e
e
e
e
e
YKL019w
RAM2
(d)
948
 
1100
e
e
e
e
e
e
e
e
e
YKL018w
 
(d)
987
 
-
                 
YKL017c
 
(d)
2049
 
1550
 
e
e
e
e
e
e
e
e
YKL016c
ATP7
(d)
522
 
1000
e
+
e
e
+
e
e
+
e
YKL015w
PUT3
(d)
2937
 
4100
e
e
e
e
e
e
e
e
e
YKL014c
 
(d)
5292
 
-
                 
YKL013c
   
513
 
800
+
+
+
+
+
+
+
+
+
YKL012w
PRP40
 
1749
 
2000
+
+
+
+
+
+
+
+
+
YKL011c
CCE1
(d)
1059
 
1400
e
e
e
e
e
e
e
e
e
YKL010c
SOS1
 
4449
 
5000
e
e
e
e
e
e
e
e
e
 

Legend

ORFs and tRNA genes are listed from the left to the rigth telomere (column 1) with a corresponding gene symbol when defined (column 2). Column 3, a (d) indicates that the probe used contains duplicated sequnces (see Figure 1). In these cases, assignment of transcripts to an ORF or tRNA gene is only tentative. ORF sizes (column 4) are in nucleotides. Transcripts are assigned to ORFs as explained in text. RNA sizes are in nucleotides (column 6), a (-) indicates absence of detectable transcript in any condition. Columns 7 to 15, transcript levels under the various conditions are indicated as follows;2+, equivalent to actin level;+, ten to 100 times less than actin transcript; e, 100 to 1000 times less than actin transcript; void, no detectable transcript. For transcript level measurement, see the text and Materials and Methods. For YKL056c, YKL042w and YKL023w, the pattern of expression is ambiguous because on these Northern blots the actin signal was too low to be reliably quantifiable. Novel RNA (column 1): position of the three RNAs described in the text which cannot be assigned to any ORF or tRNA gene. Notes: ambiguous assignment is indicated by a number in column 5 (see the text): 1, 2, 6, 10, 21, 23: two transcripts compatible with ORF size, in a non-unique probe; 3, 8, 13, 16, 18, 19, 22: transcripts much longer than ORF size; 4, 27, 28: transcripts much shorter than ORF size; 5, 15, 17, 24, 25, 26, 30: one transcript cannot be assigned to one of two or three ORFs; 9, 12, 14, 20, 29: two transcripts compatible with ORF size, in a unique probe; 7, 11: two transcripts compatible with two ORF sizes.