Yeast - Complete transcriptional map of chromosome XI

mips


ORFs YKL142w - YKL099c

 
Systematic nomenclature
Gene name
Unique-
ness
ORF size
Notes
RNA size
a YPGlu
a YPGly
a W0
alpha
YPGlu
alpha YPGly
alpha
W0
diploid YPGlu
diploid YPGly
diploid W0
YKL142w
MRP8
(d)
657
 
1000
e
+
+
e
+
+
e
+
+
YKL141w
SDH3
(d)
594
 
970
+
+
+
+
+
+
+
+
+
YKL140w
TGL1
(d)
1644
 
-
                 
YKL139w
CTK1
(d)
1584
 
1650
e
e
e
e
e
e
e
e
e
YKL138c
MRPL31
(d)
393
 
950
e
e
e
e
e
e
e
e
e
YKL137w
 
(d)
309
 
-
                 
YKL136w
 
(d)
396
 
-
                 
YKL135c
APL2
(d)
2178
 
2700
e
e
e
e
e
e
e
e
e
YKL134c
MIP1
(d)
2310
 
2700
e
e
e
e
e
e
e
e
e
YKL133c
 
(d)
1389
11
1700
e
e
e
e
e
e
e
e
e
YKL132c
 
(d)
1290
11
1400
e
e
e
e
e
e
e
e
e
YKL131w
   
519
 
-
                 
YKL130c
SHE2
 
738
 
-
                 
YKL129c
MYO3
 
3813
 
5100
+
 
+
+
 
+
+
 
+
YKL128c
   
885
 
-
                 
tK(AAG)KL1
tRNA Lys1
     
-
                 
YKL127w
PGM1
 
1710
 
-
                 
YKL126w
YPK1
 
2040
 
2650
e
e
e
e
e
e
e
e
e
YKL125w
RRN3
 
1881
 
-
                 
YKL124w
   
1737
 
2300
e
+
e
e
+
e
e
+
e
YKL123w
   
378
 
-
                 
YKL122c
SRP21
 
501
 
800
+
+
+
+
+
+
+
+
+
Novel RNA
       
160
+
+
+
+
+
+
+
+
+
YKL121w
   
2556
 
3000
+
+
+
+
+
+
+
+
+
YKL120w
PMT1
 
972
 
1200
e
e
+
e
e
+
e
e
+
YKL119c
VPH2
 
645
 
900
+
+
+
+
+
+
+
+
+
YKL118w
 
(d)
309
 
-
                 
tA(GCH)KL1
tRNA Ala1
(d)
   
100
+
+
+
+
+
+
+
+
+
YKL117w
 
(d)
648
 
900
+
+
+
+
+
+
+
+
+
YKL116c
   
1564
 
1800
+
+
+
+
+
+
+
+
+
YKL115c
   
390
 
-
                 
YKL114c
APN1
 
1101
 
1300
+
+
+
+
+
+
+
+
+
YKL113c
RAD27
 
1146
 
1200
+
+
+
+
+
+
+
+
+
YKL112w
ABF1
 
2193
 
2500
+
+
+
+
+
+
+
+
+
YKL111c
   
333
 
-
                 
YKL110c
KTI12
 
939
 
1000
+
+
+
+
+
+
+
+
+
YKL109w
HAP4
(d)
1662
 
-
                 
YKL108w
 
(d)
1359
 
-
                 
YKL107w
 
(d)
927
 
-
                 
YKL106w
AAT1
(d)
1353
 
-
                 
YKL105c
 
(d)
3396
 
-
                 
YKL104c
GFA1
(d)
2151
 
-
                 
YKL103c
LAP4
 
1542
12
2000
e
e
e
e
e
e
e
e
e
       
12
1600
e
e
e
e
e
e
e
e
e
YKL102c
   
303
 
-
                 
YKL101w
   
4554
 
6600
e
e
e
e
e
e
e
e
e
YKL100c
   
1761
 
-
                 
YKL099c
 
(d)
768
 
750
e
e
 
e
e
 
e
e
 
 

Legend

ORFs and tRNA genes are listed from the left to the rigth telomere (column 1) with a corresponding gene symbol when defined (column 2). Column 3, a (d) indicates that the probe used contains duplicated sequnces (see Figure 1). In these cases, assignment of transcripts to an ORF or tRNA gene is only tentative. ORF sizes (column 4) are in nucleotides. Transcripts are assigned to ORFs as explained in text. RNA sizes are in nucleotides (column 6), a (-) indicates absence of detectable transcript in any condition. Columns 7 to 15, transcript levels under the various conditions are indicated as follows;2+, equivalent to actin level;+, ten to 100 times less than actin transcript; e, 100 to 1000 times less than actin transcript; void, no detectable transcript. For transcript level measurement, see the text and Materials and Methods. For YKL056c, YKL042w and YKL023w, the pattern of expression is ambiguous because on these Northern blots the actin signal was too low to be reliably quantifiable. Novel RNA (column 1): position of the three RNAs described in the text which cannot be assigned to any ORF or tRNA gene. Notes: ambiguous assignment is indicated by a number in column 5 (see the text): 1, 2, 6, 10, 21, 23: two transcripts compatible with ORF size, in a non-unique probe; 3, 8, 13, 16, 18, 19, 22: transcripts much longer than ORF size; 4, 27, 28: transcripts much shorter than ORF size; 5, 15, 17, 24, 25, 26, 30: one transcript cannot be assigned to one of two or three ORFs; 9, 12, 14, 20, 29: two transcripts compatible with ORF size, in a unique probe; 7, 11: two transcripts compatible with two ORF sizes.