Yeast - Complete transcriptional map of chromosome XI

mips


ORFs YKL182w - YKL143w

 
Systematic nomenclature
Gene name
Unique-
ness
ORF size
Notes
RNA size
a YPGlu
a YPGly
a W0
alpha
YPGlu
alpha YPGly
alpha
W0
diploid YPGlu
diploid YPGly
diploid W0
YKL182w
FAS1
(d)
6153
 
7700
e
e
e
e
e
e
e
e
e
YKL181w
PRPS1
(d)
1281
 
1550
e
e
e
e
e
e
e
e
e
         
750
e
e
e
e
e
e
e
e
e
YKL180w
RPL20A
(d)
552
 
850
+
+
 
+
+
   
+
 
YKL179c
 
(d)
2037
 
-
                 
YKL178c
STE3
 
1410
 
1650
2+
2+
2+
2+
2+
2+
2+
2+
2+
YKL177w
   
336
 
-
                 
YKL176c
   
2484
 
1700
e
e
e
e
e
e
e
e
e
YKL175w
   
1509
 
-
                 
YKL174c
   
1854
 
-
                 
YKL173w
GIN10
 
3024
 
4200
e
e
e
e
e
e
e
e
e
YKL172w
   
1281
 
1700
e
e
e
e
e
e
e
e
e
YKL171w
   
2784
4
900
e
e
e
e
e
e
e
e
e
YKL170w
MRPL38
(d)
414
5
-
                 
YKL169c
 
(d)
381
5
400
e
e
e
e
e
e
e
e
e
YKL168c
   
2202
 
-
                 
YKL167c
MRP49
 
411
 
-
                 
YKL166c
TPK3
 
1194
 
1950
e
e
e
e
e
e
e
e
e
YKL165c
 
(d)
2757
6
3100
e
e
e
e
e
e
e
e
e
       
6
3850
e
e
e
e
e
e
e
e
e
tE(GAA)K
tRNA Glu3
     
-
                 
YKL164c
PIR1
 
1023
7
1700
+
+
+
+
+
+
+
+
+
YKL163w
PIR3
 
975
7
1650
+
+
+
+
+
+
+
+
+
YKL162c
   
1206
 
1850
e
e
e
e
e
e
e
e
e
YKL161c
   
1299
 
1550
e
e
e
e
e
e
e
e
e
YKL160w
   
435
 
650
+
+
+
+
+
+
+
+
+
YKL159c
   
633
8
1600
e
e
e
e
e
e
e
e
e
YKL158w
 
(d)
300
 
-
                 
YKL157w
APE2
(d)
2532
 
3200
e
e
e
e
e
e
e
e
e
YKL156w
RPS27A
(d)
246
9
650
+
+
+
+
+
+
+
+
+
       
9
1100
e
e
e
e
e
e
e
e
e
YKL155c
CAP1
(d)
1884
 
2000
e
e
e
e
e
e
e
e
e
YKL154w
 
(d)
732
 
880
+
+
+
+
+
+
+
+
+
Novel RNA
       
540
e
e
e
e
e
e
e
e
e
tR(AGR)K
tRNA Arg3a
(d)
   
<100
+
+
+
+
+
+
+
+
+
YKL153w
 
(d)
507
 
-
                 
YKL152c
GPM1
(d)
741
 
840
2+
2+
2+
2+
2+
2+
2+
2+
2+
YKL151c
 
(d)
1011
 
1250
e
+
e
e
+
e
e
e
e
YKL150w
MCR1
(d)
906
 
1000
e
e
e
e
e
e
e
e
e
YKL149c
DBR1
(d)
1215
 
1500
e
e
e
e
e
e
e
e
e
YKL148c
SDH1
(d)
1920
 
2700
e
e
e
e
e
e
e
e
+
YKL147c
 
(d)
615
 
-
                 
YKL146w
 
(d)
2076
 
-
                 
YKL145w
YTA3
(d)
1401
 
2500
e
e
e
e
e
e
e
e
e
YKL144c
RPC25
(d)
636
 
900
e
e
e
e
e
e
e
e
e
YKL143w
LTV1
(d)
1389
10
1700
e
e
e
e
e
e
e
e
e
       
10
1500
+
+
+
+
+
+
+
+
+
 

Legend

ORFs and tRNA genes are listed from the left to the rigth telomere (column 1) with a corresponding gene symbol when defined (column 2). Column 3, a (d) indicates that the probe used contains duplicated sequnces (see Figure 1). In these cases, assignment of transcripts to an ORF or tRNA gene is only tentative. ORF sizes (column 4) are in nucleotides. Transcripts are assigned to ORFs as explained in text. RNA sizes are in nucleotides (column 6), a (-) indicates absence of detectable transcript in any condition. Columns 7 to 15, transcript levels under the various conditions are indicated as follows;2+, equivalent to actin level;+, ten to 100 times less than actin transcript; e, 100 to 1000 times less than actin transcript; void, no detectable transcript. For transcript level measurement, see the text and Materials and Methods. For YKL056c, YKL042w and YKL023w, the pattern of expression is ambiguous because on these Northern blots the actin signal was too low to be reliably quantifiable. Novel RNA (column 1): position of the three RNAs described in the text which cannot be assigned to any ORF or tRNA gene. Notes: ambiguous assignment is indicated by a number in column 5 (see the text): 1, 2, 6, 10, 21, 23: two transcripts compatible with ORF size, in a non-unique probe; 3, 8, 13, 16, 18, 19, 22: transcripts much longer than ORF size; 4, 27, 28: transcripts much shorter than ORF size; 5, 15, 17, 24, 25, 26, 30: one transcript cannot be assigned to one of two or three ORFs; 9, 12, 14, 20, 29: two transcripts compatible with ORF size, in a unique probe; 7, 11: two transcripts compatible with two ORF sizes.